HL_7UPH_025

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GGUCCGGCC

Length

9 nucleotides

Bulged bases

7UPH|1|I|C|1135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_025 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.1864

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7UPH|1|I|G|1132
7UPH|1|I|G|1133
7UPH|1|I|U|1134
7UPH|1|I|C|1135
7UPH|1|I|C|1136
7UPH|1|I|G|1137
7UPH|1|I|G|1138
7UPH|1|I|C|1139
7UPH|1|I|C|1140

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain d

30S ribosomal protein S9