HL_7UPH_026

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

7UPH|1|I|U|1167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_026 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.1836

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7UPH|1|I|U|1164
7UPH|1|I|G|1165
7UPH|1|I|A|1166
7UPH|1|I|U|1167
7UPH|1|I|A|1168
7UPH|1|I|A|1169
7UPH|1|I|A|1170

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain W

30S ribosomal protein S2