HL_7UPH_031

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UGCUAAUCUG

Length

10 nucleotides

Bulged bases

7UPH|1|I|C|1561

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_031 not in the Motif Atlas

Geometric match to HL_5J7L_134

Geometric discrepancy: 0.2626

The information below is about HL_5J7L_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35677.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7UPH|1|I|U|1559
7UPH|1|I|G|1560
7UPH|1|I|C|1561
7UPH|1|I|U|1562
7UPH|1|I|A|1563
7UPH|1|I|A|1564
7UPH|1|I|U|1565
7UPH|1|I|C|1566
7UPH|1|I|U|1567
7UPH|1|I|G|1568

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain s

50S ribosomal protein L23

Chain x

50S ribosomal protein L29