HL_7UPH_034

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GUGUUUCGACAC

Length

12 nucleotides

Bulged bases

7UPH|1|I|U|1638, 7UPH|1|I|U|1639, 7UPH|1|I|G|1641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_034 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3401

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7UPH|1|I|G|1634
7UPH|1|I|U|1635
7UPH|1|I|G|1636
7UPH|1|I|U|1637
7UPH|1|I|U|1638
7UPH|1|I|U|1639
7UPH|1|I|C|1640
7UPH|1|I|G|1641
7UPH|1|I|A|1642
7UPH|1|I|C|1643
7UPH|1|I|A|1644
7UPH|1|I|C|1645

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain s

50S ribosomal protein L23