HL_7UPH_044

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_044 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1485

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7UPH|1|I|C|1962
7UPH|1|I|G|1963
7UPH|1|I|U|1964
7UPH|1|I|G|1965
7UPH|1|I|A|1966
7UPH|1|I|G|1967

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain M

50S ribosomal protein L4

Chain k

50S ribosomal protein L34