HL_7UPH_047

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UUUUGUAUAA

Length

10 nucleotides

Bulged bases

7UPH|1|I|A|2074

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_047 not in the Motif Atlas

Geometric match to HL_3F2X_004

Geometric discrepancy: 0.2892

The information below is about HL_3F2X_004

Detailed Annotation

T-loop with 2 bulged bases not stacked

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7UPH|1|I|U|2066
7UPH|1|I|U|2067
7UPH|1|I|U|2068
7UPH|1|I|U|2069
7UPH|1|I|G|2070
7UPH|1|I|U|2071
7UPH|1|I|A|2072
7UPH|1|I|U|2073
7UPH|1|I|A|2074
7UPH|1|I|A|2075

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain T

50S ribosomal protein L15

Chain q

50S ribosomal protein L21