HL_7UPH_048

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGAAUAG

Length

7 nucleotides

Bulged bases

7UPH|1|I|A|2114, 7UPH|1|I|U|2115

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_048 not in the Motif Atlas

Geometric match to HL_5J7L_151

Geometric discrepancy: 0.3019

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

7UPH|1|I|C|2111
7UPH|1|I|G|2112
7UPH|1|I|A|2113
7UPH|1|I|A|2114
7UPH|1|I|U|2115
7UPH|1|I|A|2116
7UPH|1|I|G|2117

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain M

50S ribosomal protein L4