HL_7UPH_051

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_051 not in the Motif Atlas

Geometric match to HL_1MMS_002

Geometric discrepancy: 0.283

The information below is about HL_1MMS_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

7UPH|1|I|G|2212
7UPH|1|I|G|2213
7UPH|1|I|U|2214
7UPH|1|I|A|2215
7UPH|1|I|A|2216
7UPH|1|I|C|2217
7UPH|1|I|A|2218
7UPH|1|I|C|2219

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain B

30S ribosomal protein S15