HL_7UPH_057

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_057 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.161

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

7UPH|1|I|G|2472
7UPH|1|I|A|2473
7UPH|1|I|A|2474
7UPH|1|I|A|2475
7UPH|1|I|C|2476
7UPH|1|I|A|2477
7UPH|1|I|A|2478
7UPH|1|I|C|2479

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain p

50S ribosomal protein L20