HL_7UPH_061

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_061 not in the Motif Atlas

Geometric match to HL_7A0S_031

Geometric discrepancy: 0.269

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7UPH|1|I|U|2716
7UPH|1|I|G|2717
7UPH|1|I|U|2718
7UPH|1|I|G|2719
7UPH|1|I|A|2720
7UPH|1|I|G|2721

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain p

50S ribosomal protein L20

Chain q

50S ribosomal protein L21