HL_7UPH_063

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

7UPH|1|I|U|2819, 7UPH|1|I|U|2823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_063 not in the Motif Atlas

Geometric match to HL_4V9F_035

Geometric discrepancy: 0.3584

The information below is about HL_4V9F_035

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

7UPH|1|I|G|2818
7UPH|1|I|U|2819
7UPH|1|I|U|2820
7UPH|1|I|A|2821
7UPH|1|I|A|2822
7UPH|1|I|U|2823
7UPH|1|I|C|2824

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain V

50S ribosomal protein L17

Chain r

50S ribosomal protein L22