HL_7UPH_070

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGACAC(6MZ)G

Length

8 nucleotides

Bulged bases

7UPH|1|I|A|3108, 7UPH|1|I|A|3110

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_070 not in the Motif Atlas

Geometric match to HL_4WF9_038

Geometric discrepancy: 0.1563

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89567.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

8

Unit IDs

7UPH|1|I|C|3106
7UPH|1|I|G|3107
7UPH|1|I|A|3108
7UPH|1|I|C|3109
7UPH|1|I|A|3110
7UPH|1|I|C|3111
7UPH|1|I|6MZ|3112
7UPH|1|I|G|3113

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain k

50S ribosomal protein L34

Chain r

50S ribosomal protein L22