HL_7UPH_072

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7UPH|1|I|U|3187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_072 not in the Motif Atlas

Geometric match to HL_4V9F_011

Geometric discrepancy: 0.1836

The information below is about HL_4V9F_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

7UPH|1|I|C|3185
7UPH|1|I|U|3186
7UPH|1|I|U|3187
7UPH|1|I|C|3188
7UPH|1|I|G|3189
7UPH|1|I|G|3190

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain K

50S ribosomal protein L2