HL_7UPH_073

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

7UPH|1|I|U|3223, 7UPH|1|I|C|3226

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_073 not in the Motif Atlas

Homologous match to HL_5J7L_214

Geometric discrepancy: 0.5792

The information below is about HL_5J7L_214

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7UPH|1|I|C|3221
7UPH|1|I|C|3222
7UPH|1|I|U|3223
7UPH|1|I|C|3224
7UPH|1|I|G|3225
7UPH|1|I|C|3226
7UPH|1|I|G|3227

Current chains

Chain I

Tethered rRNA

Nearby chains