HL_7UPH_077

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GCGCAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_077 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.215

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

7UPH|1|I|G|3361
7UPH|1|I|C|3362
7UPH|1|I|G|3363
7UPH|1|I|C|3364
7UPH|1|I|A|3365
7UPH|1|I|A|3366
7UPH|1|I|G|3367
7UPH|1|I|C|3368

Current chains

Chain I

Tethered rRNA

Nearby chains