HL_7UPH_078

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

7UPH|1|I|A|3407, 7UPH|1|I|C|3408

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_078 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2919

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_48778.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

7UPH|1|I|G|3404
7UPH|1|I|PSU|3405
7UPH|1|I|A|3406
7UPH|1|I|A|3407
7UPH|1|I|C|3408
7UPH|1|I|3TD|3409
7UPH|1|I|A|3410
7UPH|1|I|PSU|3411
7UPH|1|I|A|3412
7UPH|1|I|A|3413
7UPH|1|I|C|3414

Current chains

Chain I

Tethered rRNA

Nearby chains