HL_7UPH_080

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GUG(6MZ)AGAUGC

Length

10 nucleotides

Bulged bases

7UPH|1|I|A|3525, 7UPH|1|I|G|3526

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_080 not in the Motif Atlas

Geometric match to HL_4WF9_047

Geometric discrepancy: 0.2203

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

8

Unit IDs

7UPH|1|I|G|3521
7UPH|1|I|U|3522
7UPH|1|I|G|3523
7UPH|1|I|6MZ|3524
7UPH|1|I|A|3525
7UPH|1|I|G|3526
7UPH|1|I|A|3527
7UPH|1|I|U|3528
7UPH|1|I|G|3529
7UPH|1|I|C|3530

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain i

50S ribosomal protein L32