HL_7UPH_083

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

7UPH|1|I|G|3744

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_083 not in the Motif Atlas

Geometric match to HL_7A0S_052

Geometric discrepancy: 0.1711

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7UPH|1|I|C|3742
7UPH|1|I|U|3743
7UPH|1|I|G|3744
7UPH|1|I|OMG|3745
7UPH|1|I|G|3746
7UPH|1|I|G|3747
7UPH|1|I|C|3748
7UPH|1|I|G|3749
7UPH|1|I|G|3750

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain U

50S ribosomal protein L16

Chain v

50S ribosomal protein L27