HL_7UPH_085

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_085 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2217

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7UPH|1|I|G|3797
7UPH|1|I|G|3798
7UPH|1|I|U|3799
7UPH|1|I|C|3800
7UPH|1|I|G|3801
7UPH|1|I|G|3802
7UPH|1|I|A|3803
7UPH|1|I|C|3804
7UPH|1|I|A|3805
7UPH|1|I|U|3806
7UPH|1|I|C|3807

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain N

50S ribosomal protein L5