HL_7UPH_088

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_088 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.3382

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7UPH|1|I|C|3868
7UPH|1|I|G|3869
7UPH|1|I|A|3870
7UPH|1|I|A|3871
7UPH|1|I|A|3872
7UPH|1|I|G|3873

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain j

50S ribosomal protein L33

Chain n

50S ribosomal protein L18