HL_7UPH_089

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

7UPH|1|I|A|3900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_089 not in the Motif Atlas

Geometric match to HL_7RQB_059

Geometric discrepancy: 0.3521

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

7UPH|1|I|U|3898
7UPH|1|I|G|3899
7UPH|1|I|A|3900
7UPH|1|I|A|3901
7UPH|1|I|U|3902
7UPH|1|I|G|3903
7UPH|1|I|G|3904
7UPH|1|I|A|3905
7UPH|1|I|A|3906
7UPH|1|I|G|3907

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain T

50S ribosomal protein L15