HL_7UPH_090

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

7UPH|1|I|A|3970, 7UPH|1|I|U|3971

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_090 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.338

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

7UPH|1|I|A|3965
7UPH|1|I|G|3966
7UPH|1|I|U|3967
7UPH|1|I|U|3968
7UPH|1|I|C|3969
7UPH|1|I|A|3970
7UPH|1|I|U|3971
7UPH|1|I|A|3972
7UPH|1|I|U|3973

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain O

50S ribosomal protein L6

Chain U

50S ribosomal protein L16

Chain m

50S ribosomal protein L36