HL_7UPH_098

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

7UPH|1|I|A|4314

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_098 not in the Motif Atlas

Geometric match to HL_7A0S_067

Geometric discrepancy: 0.1929

The information below is about HL_7A0S_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7UPH|1|I|G|4313
7UPH|1|I|A|4314
7UPH|1|I|A|4315
7UPH|1|I|G|4316
7UPH|1|I|A|4317
7UPH|1|I|C|4318
7UPH|1|I|G|4319
7UPH|1|I|A|4320
7UPH|1|I|C|4321

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain L

50S ribosomal protein L3

Chain V

50S ribosomal protein L17