HL_7UPH_113

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

7UPH|1|I|U|2146

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_113 not in the Motif Atlas

Homologous match to HL_5J7L_153

Geometric discrepancy: 0.4805

The information below is about HL_5J7L_153

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13529.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7UPH|1|I|U|2141
7UPH|1|I|U|2142
7UPH|1|I|A|2143
7UPH|1|I|A|2144
7UPH|1|I|C|2145
7UPH|1|I|U|2146
7UPH|1|I|G|2147

Current chains

Chain I

Tethered rRNA

Nearby chains

Chain j

50S ribosomal protein L33

Chain l

50S ribosomal protein L35