HL_7UPH_116

3D structure

PDB id

7UPH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a ribosome with tethered subunits

Experimental method

ELECTRON MICROSCOPY

Resolution

4.18 Å

Loop

Sequence

ACCCCAUGCCGAACU

Length

15 nucleotides

Bulged bases

7UPH|1|J|G|40, 7UPH|1|J|C|41

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UPH_116 not in the Motif Atlas

Homologous match to HL_5J7L_215

Geometric discrepancy: 0.5776

The information below is about HL_5J7L_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.2

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

7UPH|1|J|A|33
7UPH|1|J|C|34
7UPH|1|J|C|35
7UPH|1|J|C|36
7UPH|1|J|C|37
7UPH|1|J|A|38
7UPH|1|J|U|39
7UPH|1|J|G|40
7UPH|1|J|C|41
7UPH|1|J|C|42
7UPH|1|J|G|43
7UPH|1|J|A|44
7UPH|1|J|A|45
7UPH|1|J|C|46
7UPH|1|J|U|47

Current chains

Chain J

5S rRNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA

Chain N

50S ribosomal protein L5

Chain n

50S ribosomal protein L18