HL_7UQB_004

3D structure

PDB id

7UQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CUUCG

Length

5 nucleotides

Bulged bases

7UQB|1|1|U|133, 7UQB|1|1|C|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UQB_004 not in the Motif Atlas

Homologous match to HL_8C3A_004

Geometric discrepancy: 0.0792

The information below is about HL_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86929.1

Basepair signature

cWW-F

Number of instances in this motif group

9

Unit IDs

7UQB|1|1|C|132
7UQB|1|1|U|133
7UQB|1|1|U|134
7UQB|1|1|C|135
7UQB|1|1|G|136

Current chains

Chain 1

25S rRNA

Nearby chains

Chain N

60S ribosomal protein L15-A

Chain h

60S ribosomal protein L35-A