HL_7UQB_007

3D structure

PDB id

7UQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

7UQB|1|1|G|218, 7UQB|1|1|A|219, 7UQB|1|1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UQB_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.0621

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7UQB|1|1|G|216
7UQB|1|1|U|217
7UQB|1|1|G|218
7UQB|1|1|A|219
7UQB|1|1|G|220
7UQB|1|1|A|221
7UQB|1|1|A|222
7UQB|1|1|U|223
7UQB|1|1|C|224

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A