HL_7UQB_012

3D structure

PDB id

7UQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UUGCCUCGGUAA

Length

12 nucleotides

Bulged bases

7UQB|1|1|U|545, 7UQB|1|1|C|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UQB_012 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.3444

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

7UQB|1|1|U|540
7UQB|1|1|U|541
7UQB|1|1|G|542
7UQB|1|1|C|543
7UQB|1|1|C|544
7UQB|1|1|U|545
7UQB|1|1|C|546
7UQB|1|1|G|547
7UQB|1|1|G|548
7UQB|1|1|U|549
7UQB|1|1|A|550
7UQB|1|1|A|551

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 5

rRNA-processing protein