HL_7UQB_014
3D structure
- PDB id
- 7UQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- CGUCUUGAAAC(A2M)(OMC)G
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7UQB_014 not in the Motif Atlas
- Geometric match to HL_5TBW_226
- Geometric discrepancy: 0.3698
- The information below is about HL_5TBW_226
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_59342.2
- Basepair signature
- cWW-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
7UQB|1|1|C|638
7UQB|1|1|G|639
7UQB|1|1|U|640
7UQB|1|1|C|641
7UQB|1|1|U|642
7UQB|1|1|U|643
7UQB|1|1|G|644
7UQB|1|1|A|645
7UQB|1|1|A|646
7UQB|1|1|A|647
7UQB|1|1|C|648
7UQB|1|1|A2M|649
7UQB|1|1|OMC|650
7UQB|1|1|G|651
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain e
- 60S ribosomal protein L32
Coloring options: