HL_7UQB_027
3D structure
- PDB id
- 7UQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- CAUGGAAGUCG
- Length
- 11 nucleotides
- Bulged bases
- 7UQB|1|1|A|1245
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7UQB_027 not in the Motif Atlas
- Homologous match to HL_8C3A_027
- Geometric discrepancy: 0.2333
- The information below is about HL_8C3A_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_19210.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
7UQB|1|1|C|1239
7UQB|1|1|A|1240
7UQB|1|1|U|1241
7UQB|1|1|G|1242
7UQB|1|1|G|1243
7UQB|1|1|A|1244
7UQB|1|1|A|1245
7UQB|1|1|G|1246
7UQB|1|1|U|1247
7UQB|1|1|C|1248
7UQB|1|1|G|1249
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain 8
- 60S ribosomal protein L12-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain m
- Nucleolar GTP-binding protein 2
- Chain x
- RSA4 isoform 1
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