HL_7UQB_049
3D structure
- PDB id
- 7UQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- GGGAACGGGC
- Length
- 10 nucleotides
- Bulged bases
- 7UQB|1|1|G|2371
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7UQB_049 not in the Motif Atlas
- Geometric match to HL_4FRN_007
- Geometric discrepancy: 0.3964
- The information below is about HL_4FRN_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.2
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 13
Unit IDs
7UQB|1|1|G|2369
7UQB|1|1|G|2370
7UQB|1|1|G|2371
7UQB|1|1|A|2372
7UQB|1|1|A|2373
7UQB|1|1|C|2374
7UQB|1|1|G|2375
7UQB|1|1|G|2376
7UQB|1|1|G|2377
7UQB|1|1|C|2378
Current chains
- Chain 1
- 25S rRNA
Nearby chains
- Chain B
- 60S ribosomal protein L3
- Chain e
- 60S ribosomal protein L32
- Chain s
- Nuclear GTP-binding protein NUG1
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