HL_7UQB_053

3D structure

PDB id

7UQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

7UQB|1|1|G|2698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UQB_053 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1782

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7UQB|1|1|C|2693
7UQB|1|1|A|2694
7UQB|1|1|A|2695
7UQB|1|1|A|2696
7UQB|1|1|A|2697
7UQB|1|1|G|2698
7UQB|1|1|G|2699
7UQB|1|1|G|2700

Current chains

Chain 1

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain v

Ribosome production factor 2 homolog