HL_7UQB_078
3D structure
- PDB id
- 7UQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1-D52A strain with AlF4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7UQB_078 not in the Motif Atlas
- Homologous match to HL_8C3A_228
- Geometric discrepancy: 0.0915
- The information below is about HL_8C3A_228
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50688.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
7UQB|1|3|U|32
7UQB|1|3|U|33
7UQB|1|3|C|34
7UQB|1|3|C|35
7UQB|1|3|C|36
7UQB|1|3|G|37
7UQB|1|3|U|38
7UQB|1|3|C|39
7UQB|1|3|C|40
7UQB|1|3|G|41
7UQB|1|3|A|42
7UQB|1|3|U|43
7UQB|1|3|C|44
7UQB|1|3|A|45
Current chains
- Chain 3
- 5S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 5
- rRNA-processing protein
- Chain D
- 60S ribosomal protein L5
- Chain J
- 60S ribosomal protein L11-A
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