HL_7UQZ_024

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UUUGAA

Length

6 nucleotides

Bulged bases

7UQZ|1|1|U|1082

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UQZ_024 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3854

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7UQZ|1|1|U|1073
7UQZ|1|1|U|1074
7UQZ|1|1|U|1082
7UQZ|1|1|G|1083
7UQZ|1|1|A|1084
7UQZ|1|1|A|1085

Current chains

Chain 1

25S rRNA

Nearby chains

Chain T

60S ribosomal protein L21-A