HL_7UQZ_053

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

7UQZ|1|1|A|2696, 7UQZ|1|1|G|2698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UQZ_053 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.2366

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7UQZ|1|1|C|2693
7UQZ|1|1|A|2694
7UQZ|1|1|A|2695
7UQZ|1|1|A|2696
7UQZ|1|1|A|2697
7UQZ|1|1|G|2698
7UQZ|1|1|G|2699
7UQZ|1|1|G|2700

Current chains

Chain 1

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L5

Chain v

Ribosome production factor 2 homolog