HL_7UQZ_054

3D structure

PDB id

7UQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CAG(OMU)GUG

Length

7 nucleotides

Bulged bases

7UQZ|1|1|U|2731

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UQZ_054 not in the Motif Atlas

Geometric match to HL_5T16_002

Geometric discrepancy: 0.2505

The information below is about HL_5T16_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

7UQZ|1|1|C|2726
7UQZ|1|1|A|2727
7UQZ|1|1|G|2728
7UQZ|1|1|OMU|2729
7UQZ|1|1|G|2730
7UQZ|1|1|U|2731
7UQZ|1|1|G|2732

Current chains

Chain 1

25S rRNA

Nearby chains

Chain m

Nucleolar GTP-binding protein 2

Chain r

Ribosome biogenesis protein NSA2

Chain w

Ribosome biogenesis regulatory protein