HL_7UQZ_066
3D structure
- PDB id
- 7UQZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a SPB1 D52A strain
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- UGAA(PSU)UGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 7UQZ|1|2|U|74, 7UQZ|1|2|U|82, 7UQZ|1|2|C|84, 7UQZ|1|2|U|86
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7UQZ_066 not in the Motif Atlas
- Homologous match to HL_8C3A_230
- Geometric discrepancy: 0.5959
- The information below is about HL_8C3A_230
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
7UQZ|1|2|U|69
7UQZ|1|2|G|70
7UQZ|1|2|A|71
7UQZ|1|2|A|72
7UQZ|1|2|PSU|73
7UQZ|1|2|U|74
7UQZ|1|2|G|75
7UQZ|1|2|C|76
7UQZ|1|2|A|77
7UQZ|1|2|G|78
7UQZ|1|2|A|79
7UQZ|1|2|A|80
7UQZ|1|2|U|81
7UQZ|1|2|U|82
7UQZ|1|2|C|83
7UQZ|1|2|C|84
7UQZ|1|2|G|85
7UQZ|1|2|U|86
7UQZ|1|2|G|87
7UQZ|1|2|A|88
7UQZ|1|2|A|89
Current chains
- Chain 2
- 5.8S rRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain 4
- Probable metalloprotease ARX1
- Chain Y
- 60S ribosomal protein L26-A
- Chain b
- Nucleolar GTP-binding protein 1
- Chain h
- 60S ribosomal protein L35-A
- Chain j
- 60S ribosomal protein L37-A
- Chain l
- 60S ribosomal protein L39
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