HL_7UVW_034

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CGUUGGUUG

Length

9 nucleotides

Bulged bases

7UVW|1|A|U|1448, 7UVW|1|A|U|1449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UVW_034 not in the Motif Atlas

Homologous match to HL_5J7L_169

Geometric discrepancy: 0.0888

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7UVW|1|A|C|1446
7UVW|1|A|G|1447
7UVW|1|A|U|1448
7UVW|1|A|U|1449
7UVW|1|A|G|1450
7UVW|1|A|G|1451
7UVW|1|A|U|1452
7UVW|1|A|U|1453
7UVW|1|A|G|1454

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L17