HL_7UVW_100

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

CAGUUGG(H2U)UAG

Length

11 nucleotides

Bulged bases

7UVW|1|v|U|16, 7UVW|1|v|U|17, 7UVW|1|v|G|18, 7UVW|1|v|G|19, 7UVW|1|v|U|21

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UVW_100 not in the Motif Atlas

Homologous match to HL_5B63_003

Geometric discrepancy: 0.1279

The information below is about HL_5B63_003

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

7UVW|1|v|C|13
7UVW|1|v|A|14
7UVW|1|v|G|15
7UVW|1|v|U|16
7UVW|1|v|U|17
7UVW|1|v|G|18
7UVW|1|v|G|19
7UVW|1|v|H2U|20
7UVW|1|v|U|21
7UVW|1|v|A|22
7UVW|1|v|G|23

Current chains

Chain v

tRNA-met

Nearby chains