HL_7UVW_104

3D structure

PDB id

7UVW (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.37 Å

Loop

Sequence

AUCCCUUCCCGAACU

Length

15 nucleotides

Bulged bases

7UVW|1|B|C|39

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UVW_104 not in the Motif Atlas

Homologous match to HL_4V9F_074

Geometric discrepancy: 0.1364

The information below is about HL_4V9F_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97756.3

Basepair signature

cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F

Number of instances in this motif group

7

Unit IDs

7UVW|1|B|A|32
7UVW|1|B|U|33
7UVW|1|B|C|34
7UVW|1|B|C|35
7UVW|1|B|C|36
7UVW|1|B|U|37
7UVW|1|B|U|38
7UVW|1|B|C|39
7UVW|1|B|C|40
7UVW|1|B|C|41
7UVW|1|B|G|42
7UVW|1|B|A|43
7UVW|1|B|A|44
7UVW|1|B|C|45
7UVW|1|B|U|46

Current chains

Chain B

5s ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S ribosomal protein L5

Chain N

50S ribosomal protein L18