HL_7UVZ_030

3D structure

PDB id

7UVZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GUGAAAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UVZ_030 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.1163

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7UVZ|1|A|G|1276
7UVZ|1|A|U|1277
7UVZ|1|A|G|1278
7UVZ|1|A|A|1279
7UVZ|1|A|A|1280
7UVZ|1|A|A|1281
7UVZ|1|A|A|1282
7UVZ|1|A|A|1283
7UVZ|1|A|C|1284

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L17

Chain R

50S ribosomal protein L22