HL_7UVZ_046

3D structure

PDB id

7UVZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii ribosome-Streptothricin-D complex: 70S with E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

G(PSU)AAC(3TD)A(PSU)AAC

Length

11 nucleotides

Bulged bases

7UVZ|1|A|A|1909, 7UVZ|1|A|C|1910, 7UVZ|1|A|A|1912

QA status

Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7UVZ_046 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.206

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

7UVZ|1|A|G|1906
7UVZ|1|A|PSU|1907
7UVZ|1|A|A|1908
7UVZ|1|A|A|1909
7UVZ|1|A|C|1910
7UVZ|1|A|3TD|1911
7UVZ|1|A|A|1912
7UVZ|1|A|PSU|1913
7UVZ|1|A|A|1914
7UVZ|1|A|A|1915
7UVZ|1|A|C|1916

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA