HL_7V08_007

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

7V08|1|1|G|218, 7V08|1|1|A|219, 7V08|1|1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V08_007 not in the Motif Atlas

Homologous match to HL_8C3A_007

Geometric discrepancy: 0.0627

The information below is about HL_8C3A_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.12

Basepair signature

cWW-cWW-F-tWH

Number of instances in this motif group

16

Unit IDs

7V08|1|1|G|216
7V08|1|1|U|217
7V08|1|1|G|218
7V08|1|1|A|219
7V08|1|1|G|220
7V08|1|1|A|221
7V08|1|1|A|222
7V08|1|1|U|223
7V08|1|1|C|224

Current chains

Chain 1

25S rRNA

Nearby chains

Chain 2

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A