3D structure

PDB id
7V08 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain
Experimental method
ELECTRON MICROSCOPY
Resolution
2.36 Å

Loop

Sequence
GGGAACGGGC
Length
10 nucleotides
Bulged bases
7V08|1|1|G|2371
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7V08_049 not in the Motif Atlas
Geometric match to HL_4FRN_007
Geometric discrepancy: 0.3949
The information below is about HL_4FRN_007
Detailed Annotation
T-loop with unstacked turn
Broad Annotation
T-loop
Motif group
HL_27670.2
Basepair signature
cWW-tWH-F-F
Number of instances in this motif group
13

Unit IDs

7V08|1|1|G|2369
7V08|1|1|G|2370
7V08|1|1|G|2371
7V08|1|1|A|2372
7V08|1|1|A|2373
7V08|1|1|C|2374
7V08|1|1|G|2375
7V08|1|1|G|2376
7V08|1|1|G|2377
7V08|1|1|C|2378

Current chains

Chain 1
25S rRNA

Nearby chains

Chain B
60S ribosomal protein L3
Chain e
60S ribosomal protein L32
Chain s
Nuclear GTP-binding protein NUG1

Coloring options:


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