HL_7V08_054

3D structure

PDB id

7V08 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Nucleoplasmic pre-60S intermediate of the Nog2 containing pre-rotation state from a Spb1 D52A suppressor 3 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.36 Å

Loop

Sequence

CAG(OMU)GUG

Length

7 nucleotides

Bulged bases

7V08|1|1|U|2731

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V08_054 not in the Motif Atlas

Geometric match to HL_5T16_002

Geometric discrepancy: 0.2555

The information below is about HL_5T16_002

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

7V08|1|1|C|2726
7V08|1|1|A|2727
7V08|1|1|G|2728
7V08|1|1|OMU|2729
7V08|1|1|G|2730
7V08|1|1|U|2731
7V08|1|1|G|2732

Current chains

Chain 1

25S rRNA

Nearby chains

Chain m

Nucleolar GTP-binding protein 2

Chain r

Ribosome biogenesis protein NSA2

Chain w

Ribosome biogenesis regulatory protein