HL_7V2L_006

3D structure

PDB id

7V2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGUAAUGGC

Length

9 nucleotides

Bulged bases

7V2L|1|A|G|262

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V2L_006 not in the Motif Atlas

Homologous match to HL_4LFB_006

Geometric discrepancy: 0.1204

The information below is about HL_4LFB_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7V2L|1|A|G|255
7V2L|1|A|G|256
7V2L|1|A|U|257
7V2L|1|A|A|258
7V2L|1|A|A|259
7V2L|1|A|U|260
7V2L|1|A|G|261
7V2L|1|A|G|262
7V2L|1|A|C|263

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain Q

30S ribosomal protein S17

Chain T

30S ribosomal protein S20