HL_7V2M_003

3D structure

PDB id

7V2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGGAAACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V2M_003 not in the Motif Atlas

Homologous match to HL_6CZR_215

Geometric discrepancy: 0.4963

The information below is about HL_6CZR_215

Detailed Annotation

GNRA with near cWW

Broad Annotation

GNRA with near cWW

Motif group

HL_82182.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

21

Unit IDs

7V2M|1|A|G|152
7V2M|1|A|G|153
7V2M|1|A|G|154
7V2M|1|A|A|155
7V2M|1|A|A|156
7V2M|1|A|A|157
7V2M|1|A|C|158
7V2M|1|A|U|159

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain T

30S ribosomal protein S20