HL_7V2M_012

3D structure

PDB id

7V2M (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K1k4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CCGACGAGG

Length

9 nucleotides

Bulged bases

7V2M|1|A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V2M_012 not in the Motif Atlas

Geometric match to HL_5UD5_002

Geometric discrepancy: 0.3497

The information below is about HL_5UD5_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_77082.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

7V2M|1|A|C|452
7V2M|1|A|C|453
7V2M|1|A|G|454
7V2M|1|A|A|455
7V2M|1|A|C|456
7V2M|1|A|G|457
7V2M|1|A|A|458
7V2M|1|A|G|459
7V2M|1|A|G|460

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16