Motif HL_87306.1 Version HL_87306.1 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | 3-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4KQY_003 | 4KQY | 0.4149 | 1 | GNRA wlth tandem sheared | A | SAM-I riboswitch | C | 94 | U | 95 | C | 96 | G | 97 | A | 98 | A | 99 | C | 100 | G | 102 | cWW | ||
| 2 | HL_9DFE_020 | 9DFE | 0.3703 | 0 | GNRA wlth tandem sheared | 1A | LSU rRNA | G | 712 | G | 713 | U | 714 | G | 715 | A | 716 | G | 717 | A | 718 | C | 719 | cWW | ntSH | |
| 3 | HL_3HHN_010 | 3HHN | 0.3005 | 0 | GNRA wlth tandem sheared | E | Class I ligase ribozyme, self-ligation product | G | 92 | U | 93 | U | 94 | A | 95 | A | 96 | A | 97 | A | 98 | C | 99 | cWW | ntSH | |
| 4 | HL_4V9F_032 | 4V9F | 0.2179 | 1 | Anticodon loop related | 0 | LSU rRNA | A | 1274 | C | 1275 | U | 1276 | C | 1277 | A | 1278 | A | 1280 | C | 1281 | U | 1282 | cWW | cWB | ntSH |
| 5 | HL_5UD5_002 | 5UD5 | 0.1886 | 1 | tRNA anticodon loop | C | tRNA | A | 31 | C | 32 | U | 33 | C | 34 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | ncWW | ntSH |
| 6 | HL_9DE7_001 | 9DE7 | 0.0000 | 0 | GNRA with extra near cWW | A | RNA (58-MER) | C | 29 | C | 30 | G | 31 | A | 32 | A | 33 | A | 34 | A | 35 | G | 36 | cWW | ntSH | |
| 7 | HL_7PMQ_003 | 7PMQ | 0.3171 | 0 | Anticodon loop related | F | RNA (42-MER) | G | 8 | U | 9 | U | 10 | U | 11 | C | 12 | G | 13 | A | 14 | C | 15 | cWW | ||
| 8 | HL_5J8B_119 | 5J8B | 0.5441 | 1 | tRNA anticodon loop (H) | y | tRNA | A | 31 | PSU | 32 | G | 34 | A | 35 | A | 36 | MIA | 37 | A | 38 | PSU | 39 | cWW | ||
| 9 | HL_6UFM_004 | 6UFM | 0.5522 | 0 | Pseudoknot geometry | B | RNA (98-MER) | G | 13 | C | 14 | C | 15 | A | 16 | U | 17 | C | 18 | A | 19 | C | 20 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUCGAACAG | 1 |
| GGUGAGAC | 1 |
| GUUAAAAC | 1 |
| ACUCAUACU | 1 |
| ACUCUAAAU | 1 |
| CCGAAAAG | 1 |
| GUUUCGAC | 1 |
| A(PSU)UGAA(MIA)A(PSU) | 1 |
| GCCAUCAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCGAACA | 1 |
| GUGAGA | 1 |
| UUAAAA | 1 |
| CUCAUAC | 1 |
| CUCUAAA | 1 |
| CGAAAA | 1 |
| UUUCGA | 1 |
| (PSU)UGAA(MIA)A | 1 |
| CCAUCA | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- GNRA wlth tandem sheared (3)
- Anticodon loop related (2)
- tRNA anticodon loop (H) (1)
- tRNA anticodon loop (1)
- Pseudoknot geometry (1)
- GNRA with extra near cWW (1)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.19 | Avg 0.42 | Max 0.79
Coloring options: