HL_7V2N_017

3D structure

PDB id

7V2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

T.thermophilus 30S ribosome with KsgA, class K2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUCC

Length

5 nucleotides

Bulged bases

7V2N|1|A|C|779

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7V2N_017 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.3412

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7V2N|1|A|G|770
7V2N|1|A|A|771
7V2N|1|A|U|772
7V2N|1|A|C|779
7V2N|1|A|C|780

Current chains

Chain A

16s ribosomal RNA

Nearby chains

Chain K

30S ribosomal protein S11

Chain U

Ribosomal RNA small subunit methyltransferase A